I am at the point of replacing the intake manifold on my 2003 2.3L to solve an engine roughness issue just off idle, under light load. The problem is documented in this thread:
2003, 2.3L Misfire Under Certain Conditions. Before proceeding, I decided to remove the manifold runner butterfly valves to see what, if any, effect this would have. The short answer is it did not have much of an effect at all which is what member riscorpian has reported in earlier threads. The engine roughness still occurs at specific engine speeds depending on load. The motor may be making less torque below 2000 rpm but I have no way to measure that.
Here is the process I used to remove the butterflies.
1. Remove the manifold from the head. Be sure all of the harness connections are detached from the manifold. Also, there is semi-visible clamp for the EGR tube at the rear, top of the manifold accessible from the driver's side of the engine. The clamp is secured by a bolt with an 8mm head.
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2. With the manifold on the bench, remove the vacuum actuator. It is secured by three Torx screws.
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3. Remove the white, plastic lever that connects the actuator to the square runner shaft. When this piece is removed, the end of the runner shaft is visible.
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4. Remove the runner shaft. I just pulled it completely out of the manifold with a pair of pliers.
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5. Gently remove the butterfly valve carriers from each port with a small screw driver or similar tool.
6. This is the tricky part. Separate the butterfly valves from each carrier, without breaking the carrier if possible. My carriers are pretty brittle and I broke three of the four. This is not critical as the two pieces of a broken carrier will fit back into the manifold fine. The only reason to put them back in the manifold is to properly locate the seals.
7. With the carries reinstalled in the manifold, install new manifold seals (gasket).
8. Reinstall the white, plastic lever and the vacuum actuator.
9. Install the manifold.